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Defining a phylogenetic tree with the minimum number of r-state characters.

Bordewich, M. and Semple, C. (2015) 'Defining a phylogenetic tree with the minimum number of r-state characters.', SIAM journal on discrete mathematics., 29 (2). pp. 835-853.

Abstract

Semple and Steel (2002) showed that if T is a phylogenetic X-tree and C is a collection of r-state characters that defines T , then |C| ≥ (n − 3)/(r − 1), where n = |X|. In this paper, we show that, provided n is sufficiently large, this lower bound is sharp. Furthermore, we show that, for all n ≥ 13, there exists a collection of 4-state characters of size (n − 3)/3 that defines T , but there is a phylogenetic X-tree with n = 12 which is not defined by any set of 3 characters.

Item Type:Article
Keywords:Phylogenetic tree, r-State character, Chordal graph.
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Status:Peer-reviewed
Publisher Web site:http://dx.doi.org/10.1137/130924469
Publisher statement:Copyright © by SIAM. Unauthorized reproduction of this article is prohibited.
Date accepted:28 January 2015
Date deposited:06 May 2015
Date of first online publication:April 2015
Date first made open access:No date available

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