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Constructing tree-child networks from distance matrices.

Bordewich, Magnus and Semple, Charles and Tokac, Nihan (2017) 'Constructing tree-child networks from distance matrices.', Algorithmica., 80 (8). pp. 2240-2259.

Abstract

A tree-child network is a phylogenetic network with the property that each non-leaf vertex is the parent of a tree vertex or a leaf. In this paper, we show that a tree-child network on taxa (leaf) set X with an outgroup and a positive real-valued weighting of its edges is essentially determined by the multi-set of all path-length distances between elements in X provided, for each reticulation, the edges directed into it have equal weight. Furthermore, we give a polynomial-time algorithm for reconstructing such a network from this inter-taxa distance information. Such constructions are of central importance in evolutionary biology where phylogenetic networks represent the ancestral history of a collection of present-day taxa.

Item Type:Article
Full text:(AM) Accepted Manuscript
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Status:Peer-reviewed
Publisher Web site:https://doi.org/10.1007/s00453-017-0320-6
Publisher statement:The final publication is available at Springer via https://doi.org/10.1007/s00453-017-0320-6
Date accepted:27 April 2017
Date deposited:27 April 2017
Date of first online publication:08 May 2017
Date first made open access:08 May 2018

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